Mutations are alterations in the expression of a gene. These alterations lead to changes in what a gene does. Sometimes the alterations are quite visible, such as fruit color or shape, or they may be an alteration of some physiological process (such as the sucrose accumulator ) which is not visably detectable. Mutations arise normally in large populations but are ususally considered to be rare events. Plant breeders can use these sources of variation to create or enhance existing varieties. I have compiled a list of several fruit mutation genes as a reference resource for those who may wish to breed and as an informational example of what kind of variations exist in the tomato.
This is no means a complete list and was adapted from the TGRC's List of Gene Names and Symbols. Specific genes and alleles are italicized. Gene names are linked to photos when applicable. References refer to alternate pictures or articles in The Tomato Genetics Cooperative, research abstracts, release information or relevant examples.
References Column Guide:
- numbers (1,2 etc) are additional images
- low case letters refer to research papers or notes
* articles require one to scroll down the page to find specific reference
Gene | Name |
syn or allele |
Use |
|
Description
| Reference |
Abg |
Aubergine |
--- |
color |
Fruit epidermis purple, particularly on shoulder and where exposed to direct light; also enhanced by wounding. |
1, 2 |
|
ac |
apocarpous |
--- |
shape |
Highly deformed multicarpellate and apocarpous fruits |
||
Af |
Anthocyanin fruit |
--- |
color |
Anthocyanin in green and ripe fruit; environmentally sensitive, absent when shaded |
1 |
|
alc |
alcobaca |
--- |
ripening |
Greatly delayed fruit ripening processes. |
a , b, c ,d |
|
anr |
antirrhinum |
--- |
shape |
Fruit elongated with hollow tip from which epiglottis extends resembling a snapdragon flower. |
a |
|
ant |
aurantia |
ant1 |
color |
Short thick stems; many short side shoots; narrow, rugose, light green pinnae; light orange fruit; colorless pericarp. |
||
at |
apricot |
--- |
color |
Yellow-pink color of fruit flesh |
flower, 1, a*, b, c , d |
|
atv |
atroviolacium |
--- |
appearance |
Excess anthocyanin on leaves, stems, and fruits |
||
aur |
aurantiaca |
aur1 |
color |
Small, pointed, yellowish light-green pinnae; orange fruit |
||
B |
Beta-carotene |
--- |
color/ nutrition |
High B-carotene, low lycopene in ripe fruit. |
1,2 a , b , c , d , e |
|
Bc |
crimson |
ogc |
color/ nutrition |
Increased fruit lycopene content; phenotype similar to Bog. |
a , b |
|
Bm |
minutum |
--- |
color/ nutrition |
High B-carotene, low lycopene in ripe fruit. |
||
Bog |
old gold |
og |
color/ nutrition |
Corolla tawny orange; increased fruit lycopene |
flower |
|
bg |
bursting resistance |
--- |
ripening |
Resistance of fruit to bursting. |
a |
|
bk |
beaked |
bk2, bk3 |
shape |
Fruits with sharp points at stylar end. |
a |
|
Bk-2 |
Beaked |
--- |
shape |
Sharp point at stylar end of fruit |
a |
|
Bt |
bursting digenic inheritance |
bg |
ripening |
Susceptibility to fruit bursting. |
a |
|
cc |
constricting corolla |
shape |
Corolla in the presence of o results in pear shaped fruit |
a |
||
ccf |
cactiflora |
--- |
shape |
Flower greatly fasciated; androecium, gynoecium and green
tissues fused and distorted, enlarging into fruitlike structure; complete
make and female sterility |
||
cit |
citriformis |
--- |
shape |
Plant reaches 1/3 - 2/5
typical size; half erect, weakly branched; foliage color grey-green;
terminal segment of primary leaves long and narrow; older leaves
serrated; lemon shaped fruit with conspicuous stylar scar. |
||
ck |
corky fruit |
--- |
appearance |
Pericarp cracked, exposed tissues becoming brown and leathery. |
||
cr |
radial crack resistance |
--- |
ripening |
Resistance of fruit to radial cracking |
a, b |
|
ctr |
citrate concentration |
--- |
nutrition |
Low citric acid in fruit |
||
Del |
Delta |
--- |
color/ nutrition |
Reddish-orange mature fruit color, due to inhibition of lycopene, and increase of delta-carotene. |
a, b, c, d, |
|
dg |
dark green |
--- |
color |
Immature fruit color normal; darker green color appears
as fruit develops, then persists until onset of ripening, high chlorophyll
compared to normal or hp |
a, b, |
|
dps |
diospyros |
--- |
color |
Fruit tissue is dusky orange. |
||
el |
elongated |
--- |
shape |
Elongated fruits as in Oxheart. (syn. with e) |
a |
|
ep |
easy peeling |
--- |
Epidermis can be peeled from fruit without pretreatment |
|||
eu |
eugenol concentration |
--- |
nutrition |
High eugenol concentration in fruit. |
||
f |
fasciated fruit |
fD |
shape |
Fruits many-loculed as in cv. Ponderosa |
1 |
|
Fgr |
Fructose to glucose ratio |
--- | nutrition |
L.hirsutum - Ratio of fructose to glucose in fruit approx. 1.5:1; partially dominant over L. esculentum allele |
||
fp |
fruit pox |
--- |
appearance |
Many small dark green spots on immature fruit, rupture prior to ripening. |
||
Fs |
Fruit stripe |
--- |
appearance |
Fruit with dark green radial stripes opposite locules |
||
ft |
fruiting temperature |
--- |
setting ability |
Fruits can set at 40o F. |
||
Gdf |
Gold Fleck |
--- |
color |
Small dark green spots on immature fruit, do not rupture but turn yellow on ripe fruit. |
||
gf |
green flesh |
--- |
color |
Persistent chlorophyll giving ripe fruit purplish-brown color. |
1 a, b, c, d, e |
|
glu |
glutinosa |
glu1 |
color/ appearance |
Dark green, shiny fruit with sticky epidermis; poor germination. |
||
Gr |
Green ripe |
gr |
color |
Resembles gf, except that center of fruit turns red. |
a*, b |
|
gs |
green stripe |
--- |
color/ appearance |
Radical green stripes in epidermis of unripe fruit; golden in ripe fruit |
1 a, b |
|
hp-1 |
high pigment |
hp-2 |
color/ nutrition |
Chlorophyll, carotenoids, ascorbic acid content of fruit intensified. |
1, 2, a , b, c, d, e, f |
|
loa |
low acid |
--- |
Low titratable fruit acidity. |
|||
mel |
melongenoida |
mel1 |
shape |
Sometimes lax habit; oval fruit. |
||
mlt |
malate concentration | --- |
nutrition |
Low malic acid levels in fruit versus high levels in mltD. |
||
n |
nipple tip |
n-2 n-3 n-4 |
shape |
Nipple tips at stylar end of fruits. |
a , b, c, d, e |
|
nor |
non-ripening |
--- |
ripening |
Very retarded pigmentation, non-softening, and crack resistance of fruits. |
1, 2 a, b ,c*, d, e |
|
Nr |
Never ripe |
Nr-2 |
ripening/ color |
Fruits ripen slowly to dirty orange color; homozygous viable. |
1, 2 a, b, c |
|
o |
ovate |
--- |
shape |
Pear shaped fruits |
a*[Dennet], b , c |
|
O |
Oval |
ol |
shape |
Elongate fruits with low locule number |
a, b, c |
|
obl |
oblate |
--- |
shape |
Oblate fruit shaped. |
||
ova |
ovata |
--- |
shape |
Seedlings smaller, branches slender, internodes shortened;
foliage early whitish light green, later normal but light green virescent;
fruits variably egg shaped. |
||
ovi |
oviformis |
ovi1 |
shape |
Broad, keeled, more crenate pinnae; long oval fruit |
||
p |
peach |
--- |
appearance |
Fruits with dull hariry surface. |
||
pat |
parthenocarpic fruit |
pat-2 |
setting ability |
Parthenocarpic fruit; closely linked with sha (short anthers). |
a, b, c. d. e |
|
pe |
sticky peel |
pe2 |
Sticky fruit epidermis. |
a*, b |
||
ptb |
protuberant |
--- |
shape |
Stylar end of mature fruit protuberant |
||
px |
praecox |
px1 |
shape/ ripening |
Lax, spreading plant; small pinnae; larger, earlier fruit. |
||
r- |
yellow flesh |
--- |
color |
Yellow color of ripe fruit flesh |
1 a*,b, c |
|
rprov4 |
yellow flesh |
--- |
color |
Yellow color of ripe fruit flesh |
||
rprov5 |
yellow flesh |
--- |
color |
Yellow color of ripe fruit flesh |
||
ry |
yellow flesh |
--- |
color |
Reddish yellow: Likely allele of r with reddish flesh tones in ripe fruit |
a, b |
|
r(2s) |
yellow flesh |
(2s) |
color |
Yellow fruit flesh; lighter yellow flowers |
||
r(1s) |
yellow flesh |
(1s) |
color |
Yellow color of ripe fruit flesh. |
||
rin |
ripening inhibitor |
--- |
ripening |
Fruits green at maturity, later turning bright yellow, retarded ripening. |
1,2 a |
|
rl |
radial cracking resistance |
ra, cr |
ripening/ appearance |
Resistance of fruit to radial cracking. |
a |
|
sh |
sherry |
--- |
color |
Fruit flesh yellow with reddish tinge |
||
snt |
snout |
--- |
shape |
Persistant style (beaked fruit) |
||
Spf |
Superpuff |
Spf-2 |
shape |
Extremely puffy, hollow locules and bell pepper shaped fruit. |
1 a |
|
sucr |
sucrose accumulator |
TIV1 |
nutrition |
Accumulates predominantly sucrose in mature fruit, rather than glucose and fructose. |
a, b |
|
sun |
sun1642 fruit shape |
--- |
shape |
Elongated fruit shape, from Sun1642. |
||
t |
tangerine |
--- |
color |
Fruit flesh and stamens orange colored. |
1 a*, b, c, d, e, f, g, h |
|
u |
uniform ripening |
many |
ripening/ appearance |
Unripe fruits of uniform light green color, lacking normal darker shoulder. |
a* |
|
vo |
virescent orange |
--- |
color |
Yellow virescent; mature leaves pale bluish green; fruit flesh orange, redder in outer walls. |
||
y |
colorless fruit epidermis |
--- |
color/ appearance |
Fruit epidermis lacks pigmentation (clear skin). |
a, b, c |