Tomato Fruit Mutations

Fruit of 'Long John'
Fruit of cv 'Long John'
Mutations are alterations in the expression of a gene. These alterations lead to changes in what a gene does. Sometimes the alterations are quite visible, such as fruit color or shape, or they may be an alteration of some physiological process (such as the sucrose accumulator ) which is not visably detectable. Mutations arise normally in large populations but are ususally considered to be rare events. Plant breeders can use these sources of variation to create or enhance existing varieties.  I have compiled a list of several fruit mutation genes as a reference resource  for those who may wish to breed and as an informational example of what kind of variations exist in the tomato.

This is no means a complete list and was adapted from the TGRC's List of Gene Names and Symbols
. Specific genes and alleles are italicized. Gene names are linked to photos when applicable. References refer to alternate pictures or articles in The Tomato Genetics Cooperative,  research abstracts, release information or relevant examples.

References Column Guide:
  • numbers (1,2 etc)  are additional images
  • low case letters refer to research papers or notes
* articles require one to scroll down the page to find specific reference
specific genes inheritances are noted by upper (dominate) and lower (recessive) cases

Gene Name
syn
or allele
Use 
 
Description
Reference

Abg

Aubergine

---

color


Fruit epidermis purple, particularly on shoulder and where exposed to direct light; also enhanced by wounding.

1, 2

ac
apocarpous    
---
shape

Highly deformed multicarpellate and apocarpous fruits

Af
Anthocyanin fruit
---
color

Anthocyanin in green and ripe fruit; environmentally sensitive, absent when shaded
1
alc
alcobaca
---
ripening

Greatly delayed fruit ripening processes.
a , b, c ,d
anr
antirrhinum
---
shape

Fruit elongated with hollow tip from which epiglottis extends resembling a snapdragon flower.
a
ant
aurantia
ant1
color

Short thick stems; many short side shoots; narrow, rugose, light green pinnae; light orange fruit; colorless pericarp.

at
apricot
---
color

Yellow-pink color of fruit flesh
flower, 1,
a*, b, c , d
atv
atroviolacium
---
appearance

Excess anthocyanin on leaves, stems, and fruits

aur
aurantiaca
aur1
color

Small, pointed, yellowish light-green pinnae; orange fruit

B
Beta-carotene
---
color/
nutrition

High B-carotene, low lycopene in ripe fruit.
1,2
a , b , c , d , e
Bc
crimson
ogc
color/
nutrition

Increased fruit lycopene content; phenotype similar to Bog.
a , b
Bm
minutum
---
color/
nutrition

High B-carotene, low lycopene in ripe fruit.

Bog
old gold
og
color/
nutrition

Corolla tawny orange; increased fruit lycopene
flower
bg
bursting resistance
---
ripening

Resistance of fruit to bursting.
a
bk
beaked
bk2, bk3
shape

Fruits with sharp points at stylar end.
a
Bk-2
Beaked
---
shape

Sharp point at stylar end of fruit
a
Bt
bursting digenic inheritance
bg
ripening

Susceptibility to fruit bursting.
a
cc
constricting corolla

shape

Corolla in the presence of o results in pear shaped fruit
a
ccf
cactiflora
---
shape

Flower greatly fasciated; androecium, gynoecium and green tissues fused and distorted, enlarging into fruitlike structure; complete make and female sterility

cit
citriformis    
---
shape

Plant reaches 1/3 - 2/5 typical size; half erect, weakly branched; foliage color grey-green; terminal segment of primary leaves long and narrow; older leaves serrated; lemon shaped fruit with conspicuous stylar scar.

ck
corky fruit
---
appearance

Pericarp cracked, exposed tissues becoming brown and leathery.

cr
radial crack resistance
---
ripening

Resistance of fruit to radial cracking
a, b
ctr
citrate concentration
---
nutrition

Low citric acid in fruit

Del
Delta
---
color/
nutrition

Reddish-orange mature fruit color, due to inhibition of lycopene, and increase of delta-carotene.
a, b, c, d,
dg
dark green
---
color

Immature fruit color normal; darker green color appears as fruit develops, then persists until onset of ripening, high chlorophyll compared to normal or hp
a, b,
dps
diospyros
---
color

Fruit tissue is dusky orange.

el
elongated
---
shape

Elongated fruits as in Oxheart. (syn. with e)
a
ep
easy peeling
---


Epidermis can be peeled from fruit without pretreatment

eu
eugenol concentration
---
nutrition

High eugenol concentration in fruit.

f
fasciated fruit   
fD
shape

Fruits many-loculed as in cv. Ponderosa
1
Fgr
Fructose to glucose ratio
 --- nutrition

L.hirsutum - Ratio of fructose to glucose in fruit approx. 1.5:1; partially dominant over L. esculentum allele

fp
fruit pox
---
appearance

Many small dark green spots on immature fruit, rupture prior to ripening.

Fs
Fruit stripe
---
appearance

Fruit with dark green radial stripes opposite locules

ft
fruiting temperature
---
setting ability

Fruits can set at 40o F.

Gdf
Gold Fleck
---
color

Small dark green spots on immature fruit, do not rupture but turn yellow on ripe fruit.

gf
green flesh
---
color

Persistent chlorophyll giving ripe fruit purplish-brown color.
1
a, b, c, d, e
glu
glutinosa
glu1
color/
appearance

Dark green, shiny fruit with sticky epidermis; poor germination.

Gr
Green ripe
gr
color

Resembles gf, except that center of fruit turns red.
a*, b
gs
green stripe
---
color/
appearance

Radical green stripes in epidermis of unripe fruit; golden in ripe fruit
1
a, b
hp-1
high pigment
hp-2
color/
nutrition

Chlorophyll, carotenoids, ascorbic acid content of fruit intensified.
1, 2,
a , b, c, d, e, f
loa
low acid
---


Low titratable fruit acidity.

mel
melongenoida   
mel1
shape

Sometimes lax habit; oval fruit.

mlt
malate concentration ---
nutrition

Low malic acid levels in fruit versus high levels in mltD.

n
nipple tip
n-2
n-3
n-4
shape

Nipple tips at stylar end of fruits.
a , b, c, d,
e
nor
non-ripening
---
ripening

Very retarded pigmentation, non-softening, and crack resistance of fruits.
1, 2
a, b ,c*, d, e
Nr
Never ripe
Nr-2
ripening/
color

Fruits ripen slowly to dirty orange color; homozygous viable.
1, 2
a, b, c
 o
ovate
---
shape

Pear shaped fruits
a*[Dennet], b , c
O
Oval
ol
shape

Elongate fruits with low locule number
a, b, c
obl
oblate
---
shape

Oblate fruit shaped.

ova
ovata
---
shape

Seedlings smaller, branches slender, internodes shortened; foliage early whitish light green, later normal but light green virescent; fruits variably egg shaped.

ovi
oviformis
ovi1
shape

Broad, keeled, more crenate pinnae; long oval fruit

p
peach
---
appearance

Fruits with dull hariry surface.

pat
parthenocarpic fruit
pat-2
setting
ability

Parthenocarpic fruit; closely linked with sha (short anthers).
a, b, c. d. e
pe
sticky peel
pe2


Sticky fruit epidermis.
a*, b
ptb
protuberant
---
shape

Stylar end of mature fruit protuberant

px
praecox
px1
shape/
ripening

Lax, spreading plant; small pinnae; larger, earlier fruit.

r-
yellow flesh
---
color

Yellow color of ripe fruit flesh
1
a*,b
, c
rprov4
yellow flesh
---
color

Yellow color of ripe fruit flesh

rprov5
yellow flesh
---
color

Yellow color of ripe fruit flesh

ry
yellow flesh
---
color

Reddish yellow: Likely allele of r with reddish flesh tones in ripe fruit
a, b
r(2s)
yellow flesh
(2s)
color

Yellow fruit flesh; lighter yellow flowers

r(1s)
yellow flesh
(1s)
color

Yellow color of ripe fruit flesh.

rin
ripening inhibitor
---
ripening

Fruits green at maturity, later turning bright yellow, retarded ripening.
1,2
a
rl
radial cracking resistance
ra, cr
ripening/
appearance

Resistance of fruit to radial cracking.
a
sh
sherry
---
color

Fruit flesh yellow with reddish tinge

snt
snout
---
shape

Persistant style (beaked fruit)

Spf
Superpuff
Spf-2
shape

Extremely puffy, hollow locules and bell pepper shaped fruit.
1
a

sucr
sucrose accumulator
TIV1
nutrition

Accumulates predominantly sucrose in mature fruit, rather than glucose and fructose.
a, b
sun
sun1642 fruit shape
---
shape

Elongated fruit shape, from Sun1642.

t
tangerine
---
color

Fruit flesh and stamens orange colored.
1
a*, b, c, d, e, f, g, h
u

uniform ripening
many
ripening/
appearance

Unripe fruits of uniform light green color, lacking normal darker shoulder.
a*
vo
virescent orange
---
color

Yellow virescent; mature leaves pale bluish green; fruit flesh orange, redder in outer walls.

y
colorless fruit epidermis
---
color/
appearance

Fruit epidermis lacks pigmentation (clear skin).
a, b, c

* articles require one to scroll down the page to find specific reference

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